Development and Integration of an In-Situ Framework for Flow Visualization of Large-Scale, Unsteady Phenomena in ICON

Authors

  • Michael Vetter Centrum für Erdsystemforschung und Nachhaltigkeit (CEN), Universität Hamburg
  • Stephan Olbrich Regional Computing Center (RRZ), Universität Hamburg

DOI:

https://doi.org/10.14529/jsfi170303

Abstract

With large-scale simulation models on massively parallel supercomputers generating increasingly large data sets, in-situ visualization is a promising way to avoid bottlenecks. Enabling in-situ visualization in a simulation model asks for special attention to the interface between a parallel simulation model and the data analysis part of the visualization, and to presentation and interaction scenarios. Modifications to scientific workflows would potentially result in a paradigm shift, which affects compute and data intensive applications generally. We present our approach for enabling in-situ visualization within the highly parallelized climate model ICON using the DSVR visualization framework. We focus on the requirements for generalized grid and data structures, and for universal, scalable algorithms for volume and flow visualization of time series. In-situ pathline extraction as a technique for the visualization of unsteady flows has been integrated in the climate simulation model ICON and verified in first studies.

References

Ayachit, U., Bauer, A., Geveci, B., O’Leary, P., Moreland, K., Fabian, N., Mauldin, J.: Paraview catalyst: Enabling in situ data analysis and visualization. In: Proceedings of the First Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization. pp. 25–29. ISAV2015, ACM, New York, NY, USA (2015), DOI: 10.1145/2828612.2828624

Bauer, A.C., Abbasi, H., Ahrens, J., Childs, H., Geveci, B., Klasky, S., Moreland, K., O’Leary, P., Vishwanath, V., Whitlock, B., Bethel, E.W.: In situ methods, infrastructures, and applications on high performance computing platforms. In: Proceedings of the Eurographics / IEEE VGTC Conference on Visualization: State of the Art Reports. pp. 577–597. EuroVis ’16, Eurographics Association, Goslar Germany, Germany (2016), DOI: 10.1111/cgf.12930

Bhaniramka, P., Wenger, R., Crawfis, R.: Isosurface construction in any dimension using convex hulls. IEEE Transactions on Visualization and Computer Graphics 10(2), 130–141 (Mar 2004), DOI: 10.1109/TVCG.2004.1260765

Brodlie, K.W., Duce, D.A., Gallop, J.R., Wood, J.D.: Distributed cooperative visualization. In: Proceedings of Eurographics’98 State of the Art Reports. pp. 27–50 (1998)

Fabian, N., Moreland, K., Thompson, D., Bauer, A.C., Marion, P., Gevecik, B., Rasquin, M., Jansen, K.E.: The paraview coprocessing library: A scalable, general purpose in situ visualization library. In: 2011 IEEE Symposium on Large Data Analysis and Visualization. pp. 89–96 (Oct 2011)

Haber, R.B., Mc Nabb, D.A.: Visualization Idioms: A Conceptual Model for Scientific Visualization Systems. In: Visualization in Scientific Computing (1990)

Jensen, N., Olbrich, S., Pralle, H., Raasch, S.: An efficient system for collaboration in tele-immersive environments. In: Proceedings of the Fourth Eurographics Workshop on Parallel Graphics and Visualization. pp. 123–131. EGPGV ’02, Eurographics Association, Aire-la-Ville, Switzerland, Switzerland (2002), http://dl.acm.org/citation.cfm?id=569673.569695

Lorensen, W.E., Cline, H.E.: Marching cubes: A high resolution 3d surface construction algorithm. In: Proceedings of the 14th Annual Conference on Computer Graphics and Interactive Techniques. pp. 163–169. SIGGRAPH ’87 (1987), DOI: 10.1145/37401.37422

Ma, K.L., Wang, C., Yu, H., Tikhonova, A.: In-situ processing and visualization for ultrascale simulations. Journal of Physics: Conference Series 78(1), 012043 (2007), http://stacks.iop.org/1742-6596/78/i=1/a=012043

Manten, S., Breuer, I., Olbrich, S.: Parallel isosurface extraction including polygon simplification via self adapting vertex clustering. In: The Ninth IASTED International Conference on Visualization, Imaging and Image Processing (VIIP-2009). Cambridge, UK (2009)

Manten, S., Vetter, M., Olbrich, S.: Evaluation of a scalable in-situ visualization system approach in a parallelized computational fluid dynamics application. In: Brunnett, G., Coquillart, S., Welch, G. (eds.) Virtual Realities: Dagstuhl Seminar 2008. pp. 225–238. Springer Vienna, Vienna (2011), DOI: 10.1007/978-3-211-99178-7_12

McLoughlin, T., Laramee, R.S., Peikert, R., Post, F.H., Chen, M.: Over Two Decades of Integration-Based, Geometric Flow Visualization. Computer Graphics Forum (2010)

Olbrich, S., Pralle, H., Raasch, S.: Using streaming and parallelization techniques for 3d visualization in a high performance computing and networking environment. In: Hertzberger, B., Hoekstra, A., Williams, R. (eds.) High-Performance Computing and Networking: 9th International Conference, HPCN Europe 2001 Amsterdam, The Netherlands, June 25–27, 2001 Proceedings. pp. 231–240. Springer Berlin Heidelberg, Berlin, Heidelberg (2001), DOI: 10.1007/3-540-48228-8_24

Pugmire, D., Peterka, T., Garth, C.: Parallel integral curves. In: Bethel, E.W., Childs, H., Hansen, C. (eds.) High-Performance Visualization - Enabling Extreme-Scale Scientific Insight, chap. 6. CRC Press (2012)

Vetter, M., Manten, S., Olbrich, S.: Exploring unsteady flows by parallel extraction of property-enhanced pathlines and interactive post-filtering. In: Proceedings of 14th Eurographics Symposium on Virtual Environments (EGVE 2007), Posters. pp. 9–12 (2008)

Vetter, M., Olbrich, S.: Scalability issues of in-situ visualization in parallel simulation of unsteady flows. In: Bischof, C., Hegering, H.G., Nagel, W.E., Wittum, G. (eds.) Competence in High Performance Computing 2010: Proceedings of an International Conference on Competence in High Performance Computing, June 2010, Schloss Schwetzingen, Germany. pp. 177–190. Springer Berlin Heidelberg, Berlin, Heidelberg (2012), DOI: 10.1007/978-3-642-24025-6_15

Weigle, C., Banks, D.C.: Complex-valued contour meshing. In: Proceedings of the 7th Conference on Visualization ’96. pp. 173–ff. VIS ’96, IEEE Computer Society Press, Los Alamitos, CA, USA (1996), http://dl.acm.org/citation.cfm?id=244979.245051

Whitlock, B., Favre, J.M., Meredith, J.S.: Parallel in situ coupling of simulation with a fully featured visualization system. In: Proceedings of the 11th Eurographics Conference on Parallel Graphics and Visualization. pp. 101–109. EGPGV ’11, Eurographics Association, Aire-la-Ville, Switzerland, Switzerland (2011), DOI: 10.2312/EGPGV/EGPGV11/101-109

Wong, P.C., Shen, H.W., Johnson, C.R., Chen, C., Ross, R.B.: The top 10 challenges in extreme-scale visual analytics. IEEE computer graphics and applications 32(4), 63–67 (2012)

Wood, J., Brodlie, K., Wright, H.: Visualization over the world wide web and its application to environmental data. In: Proceedings of the 7th conference on Visualization ’96. pp. 81–ff. VIS ’96, IEEE Computer Society Press, Los Alamitos, CA, USA (1996), http://dl.acm.org/citation.cfm?id=244979.245010

Zängl, G., Reinert, D., Rípodas, P., Baldauf, M.: The icon (icosahedral non-hydrostatic) modelling framework of dwd and mpi-m: Description of the non-hydrostatic dynamical core. Quarterly Journal of the Royal Meteorological Society 141(687), 563–579 (2015), DOI: 10.1002/qj.2378

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Published

2017-10-19

How to Cite

Vetter, M., & Olbrich, S. (2017). Development and Integration of an In-Situ Framework for Flow Visualization of Large-Scale, Unsteady Phenomena in ICON. Supercomputing Frontiers and Innovations, 4(3), 55–67. https://doi.org/10.14529/jsfi170303